BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008E05SP1|AL425873
(767 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1329 329 7e-90
>3x_Contig1329
Length = 7405
Score = 329 bits (165), Expect = 7e-90
Identities = 403/483 (83%)
Strand = Plus / Plus
Query: 285 taattttttattaagaagagttttgagtgaaaaattaawaattagtgtaaaaatgatttt 344
|||||| ||||||| |||||||||||||||| || | | | ||||||| ||||||||
Sbjct: 1682 taatttcttattaacaagagttttgagtgaaccatcaccactccgtgtaaacatgatttt 1741
Query: 345 ttatttatattattatgttttaaaatattaatttataaaggattttgaaaatttaaattt 404
||||||||| |||| |||| | |||| ||| |||||| | ||||||| ||| |||| |
Sbjct: 1742 ctatttatatcattacgtttcacaatactaacttataacgcattttgaccattcaaatct 1801
Query: 405 tatttagaagaaagaaagatggaaatatggttagtgaagtaaatttggaaaaaaaatagg 464
|||| ||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||
Sbjct: 1802 tattcagaagcaagaaagatggaaacatggtcagtgaagtacccttggaacaaaaatagg 1861
Query: 465 gattaatttataaatttaataaataattaaattttgaatatataggttttggataaaagg 524
|||| |||||||||| || ||| | ||||||||||||||||||||||| |||| |||
Sbjct: 1862 ccctaatctataaatttactacatactcaaattttgaatatataggttttgcataacagg 1921
Query: 525 tttgaatatttattaatagtatttgttgatagattttaataatattaatatgaaagttgg 584
||||| ||| ||| |||| |||| || ||||||| || ||||| || |||||||||||
Sbjct: 1922 tttgactatctatcaatactattccttcatagattccaacaatatcaacatgaaagttgg 1981
Query: 585 aattagtaagttatgattgaaagtagtattangtttgaagatgttagataggaaatatat 644
|||||||||||||| ||| |||||| ||||| || |||||| || ||||||| |||
Sbjct: 1982 aattagtaagttatcattcaaagtactattaccttccaagatgccagctaggaaacatac 2041
Query: 645 aagaaataaatttatgaaagataawttggtgaaaaagttaaagtaaacttttataattac 704
||||| ||||| ||||| || | | |||||||||||||||||||||||| ||||| ||
Sbjct: 2042 aagaaccaaattcatgaacgacacctcggtgaaaaagttaaagtaaactttcataatcac 2101
Query: 705 tgtagttatgctagtagctgcaatgaatgcaaaagtgctctngaaagttttaaaagtatt 764
||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct: 2102 tgtagttatgccagtagctgcaatgaatgcaaaagtgccctcgaaagttttacaagtatt 2161
Query: 765 tgg 767
|||
Sbjct: 2162 tgg 2164
Score = 217 bits (109), Expect = 3e-56
Identities = 190/217 (87%)
Strand = Plus / Plus
Query: 4 gaattattatttgattttaaaatataaattgaaaagtaaagattatgaaaaataaatagt 63
|||| ||| |||||||| ||| |||| ||||||||||||||||||| |||||||||||||
Sbjct: 1401 gaatcattctttgatttcaaactatacattgaaaagtaaagattatcaaaaataaatagt 1460
Query: 64 aaatatgtataatatatttaaagtaaatgatatgaaatgtttgtaaaagaattttwagaa 123
||| | ||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||
Sbjct: 1461 aaacacgtataatatatttaacgtaaatgatatgaaatgtttgtaaacgaattctcagaa 1520
Query: 124 aattttaagtttgtgtgtaataggaaaaaaattgttatattaaaaaaagagataattggt 183
||| | || |||||||||||||| | | || ||||||| |||||||||||| ||||||
Sbjct: 1521 cattctcagcttgtgtgtaataggcaccacatcgttatatcaaaaaaagagatcattggt 1580
Query: 184 taagaatgaaaaggggaaataaaaagattggaagagt 220
|||||||| ||||||||||||||||||||| ||||
Sbjct: 1581 ccagaatgaacaggggaaataaaaagattggacgagt 1617
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,937
Number of Sequences: 1807
Number of extensions: 10937
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 767
length of database: 10,358,551
effective HSP length: 16
effective length of query: 751
effective length of database: 10,329,639
effective search space: 7757558889
effective search space used: 7757558889
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)